56.1
Biogeochemical Cycles
pp. 1265–1271- An ecosystem includes all the organisms that live in a particular place plus the abiotic (nonliving) environment at that location. Ecosystems are intrinsically dynamic in how they process both matter and energy. Watch Ecosystem Ecology: Links in the Chain - Crash Course Ecology #7 on YouTube, from CrashCourse
- Atoms keep their identity through biological processing. A carbon or oxygen atom is assembled into new compounds, later broken down, and released unaltered — Earth holds an essentially fixed number of atoms of each biologically important element, so atoms must be recycled. Watch Biogeochemical cycles | Ecology | Khan Academy on YouTube, from Khan Academy
- Biogeochemical cycles involve biological organisms and processes and geological (abiotic) systems. They span scales from cellular to planetary and timescales from seconds (biochemical reactions) to millennia (rock weathering). Watch Biogeochemical cycles | Ecology | Khan Academy on YouTube, from Khan Academy
- Carbon forms the framework of all organic compounds; nearly 20% of human body weight is carbon. Watch The carbon cycle | Middle school Earth and space science | Khan Academy on YouTube, from Khan Academy
- CO₂ is the most significant carbon compound in the abiotic environment: 0.03% of atmospheric volume, which works out to about 750 billion metric tons of carbon in the atmosphere. Watch The carbon cycle | Middle school Earth and space science | Khan Academy on YouTube, from Khan Academy
- In water, CO₂ reacts spontaneously to form bicarbonate ions (HCO₃⁻). Aquatic photosynthesis draws on both dissolved CO₂ and HCO₃⁻. Watch The carbon cycle | Middle school Earth and space science | Khan Academy on YouTube, from Khan Academy
- Carbon fixation = photosynthetic organisms taking atmospheric CO₂ and building carbon-containing organic compounds. Generally, fixation means metabolic reactions that make nongaseous compounds from gaseous ones — the same word is used in the nitrogen cycle. Watch The carbon cycle | Middle school Earth and space science | Khan Academy on YouTube, from Khan Academy
- Vocabulary trap: carbon molecules inside an organism are called organic; those outside an organism are called inorganic.
- Methanogens are microbes that break down organic compounds by anaerobic cellular respiration, producing CH₄ rather than CO₂. A major source is wetland ecosystems, where they live in oxygen-free sediments. Watch The carbon cycle | Middle school Earth and space science | Khan Academy on YouTube, from Khan Academy
- Methane that enters the atmosphere is oxidized abiotically to CO₂, but CH₄ kept away from oxygen can persist for very long periods.
- Burning fossil fuels creates a large contemporary imbalance: carbon that took millions of years to accumulate is returned to the atmosphere rapidly, driving CO₂ upward year by year and contributing to global warming. Watch The Hydrologic and Carbon Cycles: Always Recycle! - Crash Course Ecology #8 on YouTube, from CrashCourse
- The water cycle is the most familiar cycle; the bodies of most organisms are mostly water, and humans are about 60% water by weight. Watch The water cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- Distinctive feature of the water cycle: water is a compound, not an element, so it can be synthesized (in aerobic respiration) and chemically split (in photosynthesis). Those rates are ordinarily about equal, so a relatively constant amount cycles through the biosphere. Watch The water cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- In terrestrial ecosystems about 90% of the water reaching the atmosphere passes through plants: roots take it from soil and it evaporates from leaves as transpiration. Watch The water cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- Groundwater occurs in aquifers — permeable underground layers of rock, sand, and gravel that are often saturated. It is the most important land reservoir in many regions, over 95% of all freshwater in the United States. Watch The water cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- Groundwater has two parts: the upper water table, unconfined, flowing into streams and partly reachable by plant roots; and lower confined layers, out of reach of streams and roots but tappable by wells.
- Groundwater is recharged by percolation from above and flows slowly — from a few millimeters to about a meter per day. In the United States it supplies about 25% of all water used and drinking water for about 50% of the population.
- The deep Ogallala Aquifer under the Great Plains is being depleted faster than it recharges — a local imbalance in the water cycle that threatens agricultural production, and a pattern repeated in drier regions worldwide.
- Cut or burn the rainforest and the local water cycle breaks: rain drains away in rivers instead of rising to form clouds. Large areas of 20th-century Brazil went from lush forest toward semiarid desert.
- Nitrogen is a component of all proteins and nucleic acids; proteins are 16% nitrogen by weight, so all organisms need it in quantity. Watch The nitrogen cycle | Energy and matter in biological systems | High school biology | Khan Academy on YouTube, from Khan Academy
- The nitrogen paradox: nitrogen is the element in shortest supply in many ecosystems even though the atmosphere is 78% N₂ by volume — because atmospheric nitrogen is elemental N₂, and all plants and animals are unable to use that form. Watch The nitrogen cycle | Energy and matter in biological systems | High school biology | Khan Academy on YouTube, from Khan Academy
- Nitrogen fixation is the synthesis of nitrogen-containing compounds from N₂; biochemists often use the term specifically for the first step, N₂ → NH₃. It requires the nitrogenase complex (the nif gene complex) found in certain prokaryotic genera. Watch The nitrogen cycle | Energy and matter in biological systems | High school biology | Khan Academy on YouTube, from Khan Academy
- Most nitrogen-fixing microbes are free-living, but some form symbioses with the roots of legumes (Fabaceae — the pea family), alders, myrtles, and other plants. Aquatic fixation is largely done by cyanobacteria.
- Nitrification is the oxidation of part of the NH₃ to NO₃⁻ by other prokaryotic microbes. Denitrification is the conversion of NO₃⁻ nitrogen back into N₂ (or N₂O) by prokaryotes including both bacteria and archaea. Ammonia is denitrified indirectly, by being nitrified to NO₃⁻ first. Watch The nitrogen cycle | Energy and matter in biological systems | High school biology | Khan Academy on YouTube, from Khan Academy
- Nitrogenous wastes: most animals excrete protein nitrogen as NH₃; humans and other mammals excrete it as urea in urine, and several microbe types convert that urea back to NH₃, which plants and algae then take up. Watch The nitrogen cycle | Energy and matter in biological systems | High school biology | Khan Academy on YouTube, from Khan Academy
- Human fertilizer use is radically altering the global nitrogen cycle. Fertilizers supply fixed nitrogen such as ammonium (NH₄⁺) salts manufactured industrially from atmospheric N₂ — and humans have already doubled the rate at which N₂ enters soils and waters in usable form. Watch Nitrogen & Phosphorus Cycles: Always Recycle! Part 2 - Crash Course Ecology #9 on YouTube, from CrashCourse
- Phosphorus occurs in nucleic acids, membrane phospholipids, and ATP, so all organisms need it in quantity. Watch Phosphorous cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- Unlike carbon, water, and nitrogen, phosphorus has no significant gaseous form and does not cycle through the atmosphere — it exists only in liquid and solid states. Calcium, silicon, and many other mineral elements cycle the same way. Watch Phosphorous cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- Plants and algae use free inorganic PO₄³⁻ from soil or water; animals get phosphorus by eating plant or algal tissue. Phosphate remineralization is decay microbes breaking down dead bodies and releasing inorganic PO₄³⁻ for reuse. Watch Phosphorous cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- Free PO₄³⁻ stays at low concentration in soil for two reasons: it forms insoluble compounds with other soil constituents, and it is washed away by streams and rivers.
- Rock weathering releases new PO₄³⁻ on land, but rivers then carry it to ocean basins — producing a large one-way flux of phosphate from terrestrial rock into deep-sea sediments. Watch Phosphorous cycle | Ecology | Khan Academy on YouTube, from Khan Academy
- Limiting nutrient: a chain is only as strong as its weakest link. In any ecosystem, one element is in shortest supply relative to what plants and algae need, and its cycle sets the rate at which growth can proceed. Watch Nitrogen & Phosphorus Cycles: Always Recycle! Part 2 - Crash Course Ecology #9 on YouTube, from CrashCourse
- Nitrogen limits about two-thirds of the oceans and many terrestrial ecosystems. Iron limits phytoplankton in about one-third of the oceans, where wind-borne soil dust is the chief iron source. Watch Nitrogen & Phosphorus Cycles: Always Recycle! Part 2 - Crash Course Ecology #9 on YouTube, from CrashCourse
- Extra nutrients are not always good. Supplementation can trigger explosive growth in formerly limited species with detrimental effects on others — eutrophication of rivers and streams. In southern California chaparral, nitrogen deposition from auto exhaust favors nitrogen-loving invasive plants that displace natives.
- Hubbard Brook Experimental Forest (New Hampshire) is the classic whole-ecosystem nutrient-cycling study: a central stream draining a temperate deciduous mountain watershed, with six tributary streams — one per valley — each fitted with devices measuring all outflowing water and its nutrient concentrations. Watch Biogeochemical cycles | Ecology | Khan Academy on YouTube, from Khan Academy
- Baseline result: undisturbed forest is very efficient at retaining nutrients. Yearly inputs (mostly from precipitation) and outputs in stream water are only minor fractions of the nutrients present — about 1% in the case of calcium.
- The nitrogen flip is the number to remember: the undisturbed valley had been accumulating NO₃⁻ at about 5 kg per hectare per year; the deforested one lost NO₃⁻ at about 53 kg per hectare per year, dropping valley fertility and generating massive downstream algal blooms.
- Phosphorus was the exception at Hubbard Brook — it did not increase in stream water, because it stayed locked up in insoluble compounds in the soil. That single fact ties the phosphorus cycle back to the experiment.
56.2
The Flow of Energy in Ecosystems
pp. 1271–1276- The central contrast: matter is recycled, but energy is never recycled. Radiant energy from the Sun makes a one-way pass through ecosystems and is then radiated back to space as heat. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Energy exists as light, chemical-bond energy, motion, and heat. By the First Law of Thermodynamics it is neither created nor destroyed in the biosphere, only changed in form. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Organisms are also picky about form: animals need energy as chemical-bond energy from food, plants need it as light, and no organism can use heat as an energy source.
- By the Second Law of Thermodynamics, entropy tends to increase, so some conversion to heat is inevitable every time an organism uses chemical-bond or light energy. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Incoming and outgoing radiant energy must be equal for global temperature to hold steady. Human changes to atmospheric composition impede the outgoing flow — the greenhouse effect — raising global temperatures.
- Autotrophs ("self-feeders") synthesize their organic compounds from inorganic precursors such as CO₂, water, and NO₃⁻ using energy from an abiotic source. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Photoautotrophs use light — the photosynthetic organisms: plants, algae, cyanobacteria. They are the most important autotrophs in most ecosystems. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Chemoautotrophs get energy from inorganic oxidation reactions, for example microbes oxidizing hydrogen sulfide at deep-water vents. All chemoautotrophs are prokaryotic — a favorite test detail. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Heterotrophs ("fed by others") cannot build organic compounds from inorganic precursors; they take in organic compounds other organisms made and break some of them down to liberate chemical-bond energy. Animals, fungi, and many microbes are heterotrophs.
- A food chain is a sequence of species eating each other in order — for example plants → insect → shrew → hawk. Watch Food Webs and Energy Pyramids: Bedrocks of Biodiversity on YouTube, from Amoeba Sisters
- Trophic level 1 = primary producers, all the autotrophs. Every level above consists of heterotrophs, collectively the consumers. Watch What Are Trophic Levels? | Ecology & Environment | Biology | FuseSchool on YouTube, from FuseSchool - Global Education
- Herbivores (level 2) feed directly on primary producers. Primary carnivores (level 3) eat or parasitize the herbivores. Secondary carnivores (level 4) feed on the primary carnivores. Watch What Are Trophic Levels? | Ecology & Environment | Biology | FuseSchool on YouTube, from FuseSchool - Global Education
- Omnivores eat both primary producers and animals, and some carnivores eat both herbivores and lower-level carnivores — which is why the linear chain is a useful simplification, not a literal description. Real ecosystems are food webs. Watch Food Webs and Energy Pyramids: Bedrocks of Biodiversity on YouTube, from Amoeba Sisters
- The detritivore trophic level feeds on the remains of already dead organisms. Detritus is dead organic matter, and decomposers — mostly microbes and other minute organisms living on and breaking up dead matter — are a subcategory of detritivores. Watch Food Webs and Energy Pyramids: Bedrocks of Biodiversity on YouTube, from Amoeba Sisters
- Trophic levels are made of whole populations, not individuals: the primary-producer level is the populations of every autotrophic species in the ecosystem.
- Productivity is the rate at which the organisms of a trophic level collectively synthesize new organic matter. Primary productivity is the productivity of the primary producers. Watch Primary productivity in ecosystems| Matter and Energy Flow| AP Environmental Science| Khan Academy on YouTube, from Khan Academy
- Gross primary productivity (GPP) is the raw rate at which producers synthesize new organic matter. Net primary productivity (NPP) = GPP − producer respiration. Watch Primary productivity in ecosystems| Matter and Energy Flow| AP Environmental Science| Khan Academy on YouTube, from Khan Academy
- NPP is the organic matter actually available to herbivores as food — the single most exam-relevant consequence of the GPP/NPP distinction. Watch Primary productivity in ecosystems| Matter and Energy Flow| AP Environmental Science| Khan Academy on YouTube, from Khan Academy
- The productivity of any heterotroph trophic level is called secondary productivity; each heterotroph level has its own. Watch Primary productivity in ecosystems| Matter and Energy Flow| AP Environmental Science| Khan Academy on YouTube, from Khan Academy
- Primary producers capture only a small fraction of incoming sunlight: averaged over a year, about 1% of the solar energy hitting forests or oceans, sometimes far lower and up to about 5% under favorable conditions. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- The uncaptured 99% is converted immediately to heat, and some of the captured energy also becomes heat when producers respire to make ATP. Once energy becomes heat it loses most of its usefulness as fuel.
- Energy is diverted at every hand-off between heterotroph levels, so what reaches primary carnivores is far less than what reached herbivores, and what reaches secondary carnivores is far less again. Watch What Are Trophic Levels? | Ecology & Environment | Biology | FuseSchool on YouTube, from FuseSchool - Global Education
- Where a leaf-eating insect's ingested energy goes (fig 56.9): about 50% leaves in feces (available only to detritivores), about 33% is burned by cellular respiration for repair and movement and becomes heat, and only about 17% is built into insect biomass — and some of that dies of disease or accident rather than being eaten. Watch What Are Trophic Levels? | Ecology & Environment | Biology | FuseSchool on YouTube, from FuseSchool - Global Education
- The generalization to memorize: the chemical-bond energy available to a trophic level is about 10% of that available to the level before it, occasionally as high as 30%. Watch What Are Trophic Levels? | Ecology & Environment | Biology | FuseSchool on YouTube, from FuseSchool - Global Education
- NPP varies enormously by ecosystem. Wetlands and tropical rainforests run around 2000 g/m²/year of new dry organic matter; temperate forests 1200–1300; savanna 900; deserts about 90. These general ecosystem types are called biomes. Watch Primary productivity in ecosystems| Matter and Energy Flow| AP Environmental Science| Khan Academy on YouTube, from Khan Academy
- Two different rankings (fig 56.11). Per square meter, algal beds and reefs, tropical rainforest, and wetlands lead; deserts trail. World NPP multiplies that rate by the world area occupied — so uncommon but rich systems like wetlands contribute little globally, while the vast, low-rate open ocean contributes a great deal. Watch Primary productivity in ecosystems| Matter and Energy Flow| AP Environmental Science| Khan Academy on YouTube, from Khan Academy
- Available energy declines exponentially up the chain. Start producers at 1000 units and apply the 10% rule: herbivores 100, primary carnivores 10, secondary carnivores 1. Watch Impact of changes to trophic pyramids | High school biology | Khan Academy on YouTube, from Khan Academy
- That exponential decline is what limits the length of trophic chains and the number of top carnivores an ecosystem can support: about one-thousandth of captured energy reaches secondary carnivores, about one ten-thousandth would reach tertiary. This is why no predator subsists solely on eagles or lions. Watch Impact of changes to trophic pyramids | High school biology | Khan Academy on YouTube, from Khan Academy
- The longest trophic chains probably occur in the oceans; some tunas and other top ocean predators may act as third- and fourth-level carnivores. Why ocean chains run so long is not well understood.
- Cayuga Lake case study: of every 1000 calories captured by autotrophic plankton, about 150 reached herbivorous plankton, about 30 reached smelt (the principal primary carnivores), 6 reached humans who ate the smelt — but only 1.2 if trout ate the smelt and humans ate the trout. Watch What Are Trophic Levels? | Ecology & Environment | Biology | FuseSchool on YouTube, from FuseSchool - Global Education
- The human takeaway: more energy is available if people eat primary producers rather than animals, and herbivores rather than carnivores. Eating smelt instead of trout yields at least five times more fish flesh per unit time.
- An ecological pyramid stacks boxes for each trophic level with widths proportional to some ecological property. In the pyramid of energy flow (pyramid of productivity), each box is narrower than the one below it — this shape is mandated by the rules of energy flow. Watch Impact of changes to trophic pyramids | High school biology | Khan Academy on YouTube, from Khan Academy
- Pyramids can also be drawn for standing crop biomass (the biomass of all individuals alive at one time) or for numbers of individuals. Watch Impact of changes to trophic pyramids | High school biology | Khan Academy on YouTube, from Khan Academy
- A pyramid of biomass is usually upright, since low-productivity levels usually carry little biomass — but the upright shape is not mandated, and it can be inverted, with at least one level holding more biomass than the level below. Watch Impact of changes to trophic pyramids | High school biology | Khan Academy on YouTube, from Khan Academy
- How inversion works: in aquatic systems where single-celled algae (phytoplankton) feed rice-grain-sized copepods, algal turnover is extremely fast — cells divide rapidly but are consumed just as rapidly, so algal standing biomass stays small while supporting a larger animal biomass. Algal productivity is higher; algal biomass is lower. Watch Impact of changes to trophic pyramids | High school biology | Khan Academy on YouTube, from Khan Academy
- A pyramid of numbers uses the counts of individuals per level and is usually, but not always, upright — a single large producer such as a tree can support many herbivores. Watch Impact of changes to trophic pyramids | High school biology | Khan Academy on YouTube, from Khan Academy
56.3
Trophic-Level Interactions
pp. 1276–1280- Because food chains exist, a species in one trophic level can affect more than one other level. Primary carnivores affect the animals they eat and, indirectly, the plants or algae those prey were eating. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- A trophic cascade is the process by which effects exerted at an upper trophic level flow down to influence two or more lower levels. The effects themselves are called top-down effects. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- A bottom-up effect runs the other way: an effect that flows up the chain from the primary producers to higher trophic levels, usually starting with a change in primary productivity. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Top-down effects are easiest to confirm experimentally in freshwater systems, where sections of a stream can be enclosed with mesh and predators added or excluded.
- New Zealand stream experiment (3 levels): brown trout — predators on invertebrates — were added to some mesh enclosures. After 10 days, invertebrate numbers in the trout enclosures were only about two-thirds of the no-fish numbers (≈2900 vs ≈4500 per m²). Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- The cascade completed itself one level down: algal biomass was about five times greater in the trout enclosures (≈1.95 vs ≈0.4 µg chlorophyll a/cm²). Fewer grazers meant more algae.
- Northern California experiment (4 levels): in stream enclosures the principal primary carnivores were damselfly nymphs. Fish that prey on nymphs were added to some enclosures. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- The four-level result flips the sign: fish reduced damselfly nymphs → herbivorous insects (chironomids) increased → algal biomass decreased. Adding one more level reverses the effect on the bottom level — this contrast between fig 56.14 and fig 56.15 is a favorite exam item. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- Large-scale cascades are harder to verify experimentally than enclosure studies, and their workings are less thoroughly known — yet several are accepted by most ecologists.
- The classic large-scale case: sea otters, sea urchins, and kelp forests on the West Coast of North America. Otters eat urchins; urchins eat young kelp and inhibit kelp forest development. Watch Community Ecology II: Predators - Crash Course Ecology #5 on YouTube, from CrashCourse
- Two states of the otter–urchin–kelp system: abundant otters → few urchins → well-developed kelp forest; sparse otters → many urchins → impaired kelp forest. Watch Community Ecology II: Predators - Crash Course Ecology #5 on YouTube, from CrashCourse
- Orcas (killer whales) added a level on top: in recent years they have preyed intensively on otters, driving otter numbers down. The recent hypothesis is that this orca diet switch is pushing the ecosystem into the low-otter, urchin-dominated state.
- Human activity produces top-down effects mainly by removing top-level carnivores — the reverse of adding a predator in an enclosure. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- Aldo Leopold described the pattern in A Sand County Almanac long before trophic cascades were formally articulated: state after state extirpating its wolves, new "wolfless mountains" wrinkled with deer trails, every edible bush and seedling browsed to death, and trees defoliated to the height of a saddle horn.
- Barro Colorado Island (created when the Panama Canal flooded a hilltop) lost its large predators — jaguars and mountain lions. Smaller predators normally held in check — monkeys, peccaries, coatimundis, armadillos — became extraordinarily abundant and eat almost anything they find. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- On Barro Colorado, ground-nesting birds are the most vulnerable, many species have declined, and at least 15 bird species have vanished from the island entirely — a cascade measured as local extinction.
- In the oceans, overfishing has cut large predatory fish such as billfish and cod to an average of about 10% of their previous numbers in virtually all regions. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
- The cod cascade continues downward: in some regions cod prey such as certain shrimp and crabs have become many times more abundant, with further effects at still lower levels.
- Bottom-up effects occur when enhanced primary productivity flows upward, increasing food for herbivores and then for the carnivores that eat them. Predicting them requires attention to the life histories of the species present. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Stage 1 of the bottom-up model: when primary productivity is low, producers cannot support meaningful herbivore populations, so producer biomass rises with productivity — nothing is cropping it.
- Stage 2: above one threshold, herbivore populations establish and grow. Now the increase in productivity is entirely devoured by herbivores, so herbivore biomass rises while producer biomass stays flat.
- Stage 3: above another threshold, herbivores are numerous enough to support primary carnivores. Further productivity increases now go into carnivore biomass; herbivore biomass stays roughly constant because carnivores crop the increase.
- Stage 3 has a twist that students miss: with herbivores held in check by carnivores, producer biomass is released and rises again with productivity. So at high productivity, producer and carnivore biomass rise while herbivore biomass stays flat.
- The key to reading the model is keeping productivity (a rate) separate from standing crop biomass (an amount at one moment). Biomass can stay flat while productivity climbs.
- Eel River experiment (northern California) tested the model: enclosures in a river excluded large fish (secondary carnivores) and each got a roof — some clear, some tinted to varying degrees — so enclosures differed in incoming sunlight. Watch Energy Flow in Ecosystems on YouTube, from Bozeman Science
- Eel River results matched the prediction: productivity was highest under clear roofs and lowest under dark ones; as illumination and productivity rose, primary producer biomass rose and carnivore biomass rose, while the sandwiched herbivore level did not increase much.
- Manipulating light rather than adding predators is what makes the Eel River study a bottom-up experiment — the perturbation is applied at the bottom of the chain.
- Direction is the whole distinction: if the manipulation is at the top (add or remove a predator), it is top-down / trophic cascade; if it is at the base (change light, nutrients, or productivity), it is bottom-up. Both can operate in the same ecosystem at the same time. Watch How Wolves Change Rivers on YouTube, from Sustainable Human
56.4
Biodiversity and Ecosystem Stability
pp. 1280–1283- Species richness is simply the number of species present in a community. Ecologists have long debated what differences in richness do to a community. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- Ecosystem stability is the property of remaining relatively constant in composition and being able to resist disturbance. The long-standing hypothesis is that species-rich communities are more stable. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- The hypothesis has been tested most elegantly at the University of Minnesota's Cedar Creek Natural History Area. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- Cedar Creek design: 207 small rectangular plots of prairie, each 8–16 m², monitored for 11 years. In each plot researchers counted plant species and measured total plant biomass.
- Cedar Creek result 1 — stability: plots with more species showed less year-to-year variation in biomass.
- Cedar Creek result 2 — drought resistance: in two drought years, the decline in biomass was negatively related to species richness. More species meant a smaller drought hit.
- Cedar Creek result 3 — confirmation by manipulation: plots deliberately seeded with different numbers of species reproduced the pattern, with richer plots showing greater year-to-year biomass stability over 10 years. Seeding rather than observing rules out the objection that stable places simply attract more species.
- Cedar Creek result 4 — invasibility: when seeds of nonnative plants were added, the ability of those species to establish was negatively related to species richness. Invasibility is used as another measure of stability. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- The Scientific Thinking experiment in full. Question: does species richness affect the invasibility of a community? Hypothesis: successful invasion will be lower where richness is greater. Experiment: add seeds of the same number of nonnative plants to plots differing in plant species number.
- Scientific Thinking result: although the number of successful invaders is highly variable, species-rich plots are on average invaded by fewer species — the fitted line slopes downward. Note the honest caveat: the scatter is wide, so richness predicts invasion only loosely.
- A separate Cedar Creek study of 147 plots varying in species number measured growth and soil nitrogen uptake: the more species a plot held, the greater the nitrogen uptake and the greater the total biomass produced. Diversity appeared to raise productivity, not just stability.
- Laboratory confirmation: artificial 1 m² ecosystems were built in growth chambers with controlled temperature, light, air currents, and gas concentrations, stocked with 9, 15, or 31 species (lower-diversity sets being subsets of the higher). Biomass produced and CO₂ consumed both tracked species richness.
- The main objection: the more species you add, the greater the chance of including one highly productive species by luck. Under that argument the gain comes from a particular species, not from richness itself. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- Overyielding is the test that answers the objection: plot productivity must exceed that of the single most productive species grown in isolation. Recent work at Cedar Creek and elsewhere has found evidence of overyielding, supporting the claim that richness itself raises productivity and stability. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- Chapter 55 covered two other richness factors — loss of keystone species and moderate physical disturbance. This chapter adds three more: primary productivity, habitat heterogeneity, and climatic factors. Watch Community Ecology II: Predators - Crash Course Ecology #5 on YouTube, from CrashCourse
- Productivity and richness are not linearly related. Richness is greatest at intermediate levels of productivity — the hump-shaped curve seen in South African mountain plant communities. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- The explanation for the hump: at low productivity there are few herbivores, so superior plant competitors eliminate most other plants. At high productivity there are so many herbivores that only grazing-resistant plants survive. Maximum coexistence sits at intermediate productivity and intermediate herbivory.
- That hump is also the standing counterargument to the "tropics are diverse because they are productive" hypothesis: past the peak, more productivity should lower richness.
- Habitat (spatial) heterogeneity: a spatially varied abiotic environment contains many habitat types — different soil types, for instance — and can accommodate more species than a homogeneous one. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
- Heterogeneity propagates upward: varied environments support more plant species, and animal richness tends to mirror plant richness. Desert lizard richness in the American Southwest tracks the structural complexity of the plants at each site.
- Climatic factors cut both ways in theory. A seasonal environment might hold more species because different species are favored at different times of year; a stable environment might hold more because it permits specialists that could not survive fluctuation.
- The data support the stability side: along the West Coast of North America, mammal species richness is inversely correlated with the local monthly mean temperature range — the wider the swing, the fewer mammal species.
- Species diversity gradient: for many kinds of organisms, richness increases steadily from the Arctic to the tropics. It has been documented in plants, birds, mammals, and reptiles.
- The scale of the bird gradient (fig 56.21): fewer than 100 bird species at arctic latitudes versus more than 600 in southern Central America.
- The ecologists' difficulty is not producing a plausible explanation for tropical diversity but choosing among the many plausible explanations. Five are commonly discussed.
- Hypothesis 1 — evolutionary age. The tropics have persisted through long uninterrupted evolutionary time while temperate regions were repeatedly glaciated, so complex interactions had time to coevolve.
- Counterevidence to hypothesis 1: pollen in soil cores shows tropical forests contracted to small refuges surrounded by grassland during glaciations, so long-term tropical stability has been exaggerated. Phylogenies also suggest many lineages evolved in the tropics and then colonized temperate zones, so tropical richness may reflect a longer diversification period.
- Hypothesis 2 — increased productivity. More solar radiation plus a year-round growing season raise photosynthetic activity. Picture total resources as a pie and each species' niche as a slice: a bigger pie fits more slices. The counterpoint is the hump-shaped curve above.
- Hypothesis 3 — stability and constancy of conditions. Less seasonal variation encourages specialization, subdividing niches to partition resources and avoid competition, yielding more and narrower niches. Almost all field tests support this one, reporting more narrow niches in tropical communities.
- Hypothesis 4 — predation. Predation appears more intense in the tropics; heavier predation reduces the importance of competition, permits greater niche overlap, and so allows more species to coexist.
- Hypothesis 5 — spatial heterogeneity. Tropical forests are structurally complex and create many microhabitats. The tall vertical column of vegetation filters light into a wide range of frequencies and intensities, producing many distinct light environments.
- Exam framing for 56.4: know the definitions (richness, stability, invasibility, overyielding), the Cedar Creek four results, the three richness factors with their curve shapes, and the five tropical hypotheses with which one the field data favor. Watch Biodiversity Research at Cedar Creek on YouTube, from Institute on the Environment, University of Minnesota
56.5
Island Biogeography
pp. 1283–1284- One of the most reliable patterns in all of ecology: larger islands contain more species than smaller islands. This is the species-area relationship. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- In 1967, Robert MacArthur and Edward O. Wilson proposed that the species-area relationship results from the effects of geographic area and isolation on the likelihood of extinction and colonization. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Their reasoning, step 1: species are constantly dispersed to islands, so islands tend to accumulate species; at the same time other species are lost to extinction. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Step 2 — the colonization curve falls: as the number of species on an initially empty island rises, the pool of potential colonists not already present becomes depleted, so the colonization rate must decrease. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Step 3 — the extinction curve rises: the more species present on an island, the greater the chance that any given species will perish, so the extinction rate increases with species number. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Step 4 — the equilibrium: where the falling colonization curve crosses the rising extinction curve, colonizations and extinctions are equal and the number of species holds steady. Every island of a given size has a characteristic equilibrium number of species. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- The subtlety students miss: at equilibrium the number of species is constant, but species composition keeps changing as some go extinct and new ones colonize. Equilibrium is dynamic, not static. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- The area effect: smaller islands hold smaller average population sizes, so their extinction rate is higher at any given species number — a higher extinction curve, which shifts the intersection left, to fewer species. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- The distance effect: fewer colonizers reach islands far from the mainland, so their colonization rate is lower — a lower colonization curve, which also shifts the intersection left, to fewer species. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Combine the two effects and you get the prediction to memorize: small, distant islands have the fewest species; large, near islands have the most. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Changing either curve moves the equilibrium point — that is the whole graphical logic of the model, and being able to say which curve moves and which way is exactly what graph questions test. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Field confirmation from Asian Pacific bird data (fig 56.22c): species number correlates positively with island area and negatively with distance from New Guinea. Islands more than 3200 km away hold fewer bird species than nearer islands of the same size. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- The classic experimental test: Wilson and Dan Simberloff, mid-1960s, on small mangrove islands in the Florida Keys. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Simberloff–Wilson method, in order: census the islands, clear them of animal life by fumigation, then allow recolonization while censusing at regular intervals. These and other field studies have tended to support the equilibrium model. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Complication from long-term field work: the model predicts high species turnover, but studies of island birds and spiders find very little turnover from year to year. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- What turnover there is comes from a subset of species that never attain high populations, while a substantial proportion of species maintain high populations and rarely go extinct. The textbook caveat: those studies are short, and over centuries the model may still describe island richness well.
- Evolution shapes the species-area relationship too. MacArthur and Wilson built their theory on two ecological processes — colonization and extinction — yet many islands are famous for adaptive radiations, in which one ancestral species gives rise to many descendants each fitted to a different niche.
- So island area affects two things, not one: extinction rate (species go extinct less often as area increases) and the rate of speciation (larger islands have more speciation).
- Why larger islands speciate more, reason 1: the larger the island, the greater the chance a population is split in two by a river or other barrier, promoting allopatric speciation.
- Why larger islands speciate more, reason 2: larger islands are ecologically more varied, offering more niches and more chances for species to evolve differences allowing coexistence — for instance by character displacement.
- Isolation also promotes evolutionary diversification, reason 1: on islands near a mainland, repeated colonization causes gene flow, and gene flow inhibits speciation.
- Isolation also promotes diversification, reason 2: more isolated islands receive fewer colonists, leaving more available resources for newly arisen species to exploit.
- Note the tension worth understanding: nearness raises richness through colonization but lowers it through gene flow suppressing speciation. Ecological and evolutionary factors pull in opposite directions, and biologists are still refining their relative importance.
- Island biogeography is not only about islands. The logic applies to any habitat fragment surrounded by unsuitable terrain — which is why Barro Colorado Island, an artificial island made by the Panama Canal, lost species after isolation. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Summary of 56.5 in the chapter review: the species-area relationship is the observation; the equilibrium model is the explanation; area works through extinction, distance works through colonization; and speciation is the later addition to the theory. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Graph-reading drill: on the fig 56.22a axes (rate on y, number of species on x), the colonization line starts high on the left and falls; the extinction line starts at the origin and rises; the black dot where they cross is the equilibrium species number. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Predict-the-shift drill: fumigating an island (Simberloff–Wilson) moves you left along the x-axis, where colonization is high and extinction is low — which is exactly why recolonization is fast at first and then slows as the equilibrium is approached. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses
- Review-box framing: fewest species are expected on small, isolated islands far from a mainland; the review question worth thinking through is under what circumstances a smaller island could still hold more species than a larger one — for example if the smaller island is much closer to the source of colonists. Watch 29. Island Biogeography and Invasive Species on YouTube, from YaleCourses